Zebrafish
BlastView
Company Home
|
Contact
|
Site Plan
ZeneMark® Library
Living Library
Human Disease Gene Library
BLAST
Insertion List
Tools
Run a tutorial
Retrieve zenemark sequences by IDs
Download insertion table
Download zenemark sequences
FAQ
Use this Site to ...
Run a BLAST Search
Alert me for new insertions
Start a tutorial on the use of the ZeneMark database
Download the zenemarker sequences
Download the Insertion Table
Retrieve ZeneMark Sequences by their IDs
View distribution of mapped insertions
Transparent Fish Line
--Homozygous viable
--No melanophores or iridophores to obstruct vision
--Many organs visible to unaided eye (heart, ovaries, testes, intestine, brain, blood, muscle and many more)
Summary
setup
Not yet initialised
configure
Not yet initialised
results
Not yet initialised
display
Not yet initialised
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Danio_rerio
dna database
Ensembl Non-coding RNA genes
Genomic sequence
Genomic sequence (masked)
cDNAs
cDNAs (known only but not CCDS)
cDNAs (novel only)
cDNAs (pseudo genes)
Ab-initio cDNAs (Genscan/SNAP)
peptide database
Peptides
Peptides (known only but not CCDS)
Peptides (novel only)
Ab-initio Peptides (Genscan/SNAP)
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl databases, offering access to both BLAST and SSAHA programs.
[More]
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
[Feedback]